PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001846G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 464aa    MW: 50186.7 Da    PI: 8.8479
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001846G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-083834211854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  PH01001846G0090 383 MFENflRPYPKDSEKDMLAARSGLSRNQVSNWFINARVR 421
                      57766689*****************************88 PP
2BELL38.62.8e-13251317472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e q+ ++ Ll++l+ +d++Y+q+ +++q   + F+  +  g+  + + +A +a+S  +r+L+ +i++ i
  PH01001846G0090 251 EAQRVRSELLKMLQLMDQKYNQCLDEIQSTTAKFNSLMQSGT--ICAPFAHRAVSAMYRALRRRITGEI 317
                      66778899*******************************999..99*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.2E-18243314IPR006563POX domain
PROSITE profilePS5007111.386362425IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-25365436IPR009057Homeodomain-like
CDDcd000861.08E-10365426No hitNo description
SMARTSM003897.3E-7365429IPR001356Homeobox domain
SuperFamilySSF466891.67E-15366434IPR009057Homeodomain-like
PfamPF059201.5E-15382421IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MPQPDHGGFG FGLGFCFGDA AVEGATAAAD IGAQFTANNL MLSSLASQLF APAPQPHGDH  60
FSARTQPEEE MNGGYDVVGG DSSGAASLPF PGQSDAHAVA VWSSSKKPYC DWSNADGSRT  120
VSVHGSYHLA GPPEAVGFHY RRRPLHRCAE RAVAELVLQV LFGQHGEHRR PLLVGGKPLR  180
PDSHKQSGIR AAASVLSASA LQTAAFRRGG GALAASSCSA GAASVVSSNN KLMASPEEHP  240
LRGDAGAPWG EAQRVRSELL KMLQLMDQKY NQCLDEIQST TAKFNSLMQS GTICAPFAHR  300
AVSAMYRALR RRITGEIMVA AASRPNLGES LVMAAAGERE RSWESAFIQK HWVVQQLRRG  360
EQQCWRPQRG LPEKSVAVLK AWMFENFLRP YPKDSEKDML AARSGLSRNQ VSNWFINARV  420
RLWKPMIEEM YEELKRSSGG GEGLAMEHLT SQDVVGRAWP VPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001846G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570061e-135EU957006.1 Zea mays clone 1580361 homeodomain protein JUBEL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951423.11e-146homeobox protein ATH1
RefseqXP_004951424.11e-146homeobox protein ATH1
RefseqXP_004951425.11e-146homeobox protein ATH1
RefseqXP_004951426.11e-146homeobox protein ATH1
RefseqXP_022680719.11e-146homeobox protein ATH1
RefseqXP_022680731.11e-146homeobox protein ATH1
RefseqXP_022680746.11e-146homeobox protein ATH1
RefseqXP_022680778.11e-146homeobox protein ATH1
RefseqXP_022680845.11e-146homeobox protein ATH1
TrEMBLA0A0A9NF721e-164A0A0A9NF72_ARUDO; Uncharacterized protein
STRINGSi016883m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.19e-55homeobox gene 1