PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001857G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 565aa    MW: 60425.5 Da    PI: 6.962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001857G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11394435854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  PH01001857G0270 394 AERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 435
                      7*********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-4935199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.777386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-15392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16393460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16394457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-9394435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.62E-13394440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MEAFMASADL PAFPWGAAGA ASPPPPVPAF NPDTLQQRLQ AIIEGSRDTW TYAIFWQSSL  60
DVATGASLLG WGDGYYKGCD DDKRKQRTAT PQSQAEQDHR KRVLRELNSL ISGAGAAPDE  120
AVEEEVTDTE WFFLVSMTQS FSNGLGLPGQ VLFAGQPTWI ATGLSNAPCD RARQAYTFGL  180
RTMVCLPVGT GVLELGSTEI SVSKPPPPQI HHLENGSAST LTENPGPSVH AAPPPPPAAM  240
LPQRQHQHQH SQAQQGPFRR ELNFSDFASN ASVAAAPPFF KPESGEILNF AADNTSRRNP  300
SPAPPAATAT LTTAAGSLFS QHTATVTAAA NEAKNNPKRS MEATSRASNT NPHSAATANE  360
GMLSFSSAPT TRASTGTGAP VKSESDHSDV EASAERQRRE KLNQRFYALR AVVPNVSKMD  420
KASLLGDAIS YINELRGNLS AAESDKETLH SQIEALKKER DARPRAPSSG HDGGARCHAV  480
EIEAKILGLE AMIRVQCHKR NHPTARLMTA LRELDLDVYH ASVSVAKDLM VQQVAVKMAS  540
RVYSQEQLNA ALYSRIAEPG AAGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-59282152193Transcription factor MYC3
4rqw_B4e-59282152193Transcription factor MYC3
4rs9_A4e-59282152193Transcription factor MYC3
4yz6_A4e-59282152193Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001857G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0607550.0AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence.
GenBankAK2880820.0AK288082.1 Oryza sativa Japonica Group cDNA, clone: J075172G09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY5364280.0AY536428.1 Oryza sativa MYC protein mRNA, complete cds.
GenBankCT8316860.0CT831686.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614012.20.0transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0E0BE490.0A0A0E0BE49_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IWW70.0A0A0E0IWW7_ORYNI; Uncharacterized protein
STRINGOGLUM10G19510.10.0(Oryza glumipatula)
STRINGOS10T0575000-010.0(Oryza sativa)
STRINGONIVA10G22030.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-64bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]