PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001870G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Nin-like
Protein Properties Length: 882aa    MW: 96007.2 Da    PI: 6.5068
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001870G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK932.2e-29528579152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  PH01001870G0100 528 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKV 579
                      589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.12518599IPR003035RWP-RK domain
PfamPF020421.9E-26531579IPR003035RWP-RK domain
SuperFamilySSF542772.13E-22796879No hitNo description
Gene3DG3DSA:3.10.20.2402.8E-21799879No hitNo description
SMARTSM006664.7E-16802880IPR000270PB1 domain
PROSITE profilePS5174524.228802881IPR000270PB1 domain
PfamPF005641.9E-15803879IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MDMPAPSNRA GCNGNMGSPV GTPDDQYVAA AMMNFDGCSE LCSPLVVDQL FSLLNDPAAH  60
NMFAMWSSLG SSPRVSGMSE DMPLDTYSGR PGEAVAAPPH KIDLVSSVNP AETERVVKSS  120
GELGSDNDPQ QRSSMVPRSV ANNLLADRML MALSIFRESL GGSVLAQVWM PIEQEGHVVL  180
STCEQPFLLD QVLAGYREVS RHFVFSAKEE PGLQPGLPGR VFISGMPEWT SSVLYYSKPE  240
YLRMEYALRH DIRGSLAMPI YDPSTGSCCA IYTENQKSAF TEILDVLRAI CHAHMLPLAL  300
TWVSTSNVID GGYVAEKDSG IDSQSGKAIL RIHESACYVN DAKMQGFVHA CAECHLEKGQ  360
GIAGRALKSN LPFFSPNIRE YSIEDYPLAH HARKFGLHAA VAIRLRSTYT GNVDYILEFI  420
LPVNCRGSGE QQMILNNLSS TMQRICKSLR TVSEAEVDKV DACTAVVYKT ISESCLPTGH  480
SESSSHCDQP ITEAASQDLS LVDKQVDVET EQVQSSSMRL AEKKRSTAEK NISLDVLRKY  540
FSGSLKDAAK SLGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVI NSVHGVDSSL  600
QYDPATGSLV PAVSLPEKMP FPSGDALPTP SVGKTVDEKS SPKCEQGYSS PDGWQKESSQ  660
LQRSVVQKRE GGEFHIQTSS YSGSGNHASY GANVTQHSNS EGTQGPLYPI GAVSALHLKE  720
TGCINPSVSV RPSAESTGDQ IVGRNSPSVR QADIDMVDDH EAKGHTRPST SGRTDSSSGS  780
ASSHPTFKQN PGHALKDKSS PTLTVKATYN GDTVRFKFLP SMGWYHLLEE IAKRFKLSTG  840
VFQLKYKDDE DEWVILANDS DLQECVDVLD SIGLRYVKLQ K*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001870G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240492.10.0protein NLP2
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A446MHB00.0A0A446MHB0_TRITD; Uncharacterized protein
STRINGTRIUR3_26920-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-158Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]