PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001870G0430
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family DBB
Protein Properties Length: 228aa    MW: 24037.2 Da    PI: 4.9459
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001870G0430genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07446541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  PH01001870G0430  4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
                     6******99*********************6678888898877 PP
2zf-B_box279.2e-095586334
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+ ++ek + +fC +++ l+C+dC + +H
  PH01001870G0430 55 LPRCDVCQEKSAFIFCVEDRALFCRDCDEPIH 86
                     589**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.997147IPR000315B-box-type zinc finger
CDDcd000211.45E-6347No hitNo description
PfamPF006431.3E-5447IPR000315B-box-type zinc finger
SMARTSM003362.1E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.50353100IPR000315B-box-type zinc finger
SMARTSM003368.8E-1453100IPR000315B-box-type zinc finger
PfamPF006431.4E-65696IPR000315B-box-type zinc finger
CDDcd000216.96E-75686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLDAA LPAALPRCDV  60
CQEKSAFIFC VEDRALFCRD CDEPIHVPGT LSGNHQRYLA TGIRVGFGSV CNANVGTRAD  120
HLPPKGGSKP PSVVAAGGVP NPVPAAAQEE SPLGFKELEW FADIDLFHDH APAMGGSTAA  180
EVPELFASPQ PASNAGFYKT SGARQSKKRR VELPDDDEDY LLVPDLG*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001870G0430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6060240.0EU606024.1 Phyllostachys edulis zinc finger protein mRNA, complete cds.
GenBankFP1009730.0FP100973.1 Phyllostachys edulis cDNA clone: bphylf025o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976063.11e-113B-box zinc finger protein 24
SwissprotQ9SID12e-66BBX25_ARATH; B-box zinc finger protein 25
TrEMBLB2M1Y21e-144B2M1Y2_9POAL; Zinc finger protein
STRINGOPUNC04G14930.11e-120(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.13e-59salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]