PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001876G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 256aa    MW: 27546.3 Da    PI: 5.2122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001876G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11137184455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RRd+i +++  L++l+P +    +k   Ka++L + ++YI+ L+
  PH01001876G0340 137 SHSLAERARRDKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALE 184
                      8*************************9....677***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.38E-11131188No hitNo description
SuperFamilySSF474591.83E-17131198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18133202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.19133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8137184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-11139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAPTLTAE LWRPPHLAAA GDVGGRAVEA SSAVTGQSND IRGRGAGRRR QRESAASEDD  60
SSRLVSTSGG GGQDLADSEV KRFKAIKSSG DDGSLRTEAE ADSRNTSNTI DQNPPPAEPP  120
KQDYIHVRAR RGQATDSHSL AERARRDKIS ERMKILQDLV PGCNKVIGKA SVLDEIINYI  180
QALERQVEFL SMKLEAVNAD VNNGIEAFPS KDLGAQTYNT APGLTFDPQT PREYGQGSTA  240
SEWLHMQIGG AYESVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001876G0340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949600.0FP094960.1 Phyllostachys edulis cDNA clone: bphyem119a09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796030.11e-132transcription factor BHLH089-like
SwissprotQ84T081e-126BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2S3IH301e-131A0A2S3IH30_9POAL; Uncharacterized protein
STRINGORGLA03G0344800.11e-131(Oryza glaberrima)
STRINGOBART03G37850.11e-131(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-67BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]