PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001939G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 180aa    MW: 19830.3 Da    PI: 9.8274
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001939G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.9e-3377132258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ep+YVNaKQy++Il+RRq+Rak+e+++k  +k+rkpylheSRh hAl+R+RgsgGrF
  PH01001939G0040  77 EPVYVNAKQYHGILRRRQSRAKAESQNKA-NKTRKPYLHESRHLHALKRARGSGGRF 132
                      8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-3474135IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.63775135IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-2777132IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-2478100IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686080100IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.9E-24109132IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVLDFVTYCI FVPFAGSEFD KPHMQPDGET QAQVAYPYIG PYYGGIYGAY GGQRLVNAAL  60
MAMPPNSVPL ATDAVLEPVY VNAKQYHGIL RRRQSRAKAE SQNKANKTRK PYLHESRHLH  120
ALKRARGSGG RFVNTKAVEG KQDNKSVDKK DDGPVPSDKN YNSNETNTRI ESQNLGPTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2077136362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001939G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695809.18e-77PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP12e-38NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0E0EIX11e-75A0A0E0EIX1_9ORYZ; Uncharacterized protein
STRINGOMERI08G05480.12e-76(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165581313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-37nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]