PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001953G0120

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

VOZ

Protein Properties

Length: 590aa MW: 64794.4 Da PI: 4.9583

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001953G0120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	409	9.4e-126	247	465	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 p+ps++lgpkcalwdc r ++gse++qdyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lfaal ak+qgk+vgip+cegaat+kspwna+ PH01001953G0120 247 PSPSQYLGPKCALWDCGRLVRGSEECQDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFAALCAKIQGKNVGIPVCEGAATSKSPWNAP 340 89************************************9799********************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 elfd+sll ge++rewlffd+prrafesgnrkqrslpdysgrgwhesrkqvmk+fgglkrsyymdpqp+s +ewhl+eyein++da+alyrlel PH01001953G0120 341 ELFDISLLGGESLREWLFFDTPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKDFGGLKRSYYMDPQPASDYEWHLFEYEINDSDAIALYRLEL 434 ****************************************************************************************** PP VOZ 188 klvdekksakgkvsk.dsladlqkklgrlta 217 k +d+k+sak+k+++ +sl+++q++++rl+a PH01001953G0120 435 KFSDAKRSAKSKLAStSSLNEIQQQMVRLSA 465 ********975278*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MAGDPSSGGG GHGSAPGKGS RSSSRHRQFR DRAKTRVDDL QEMFSGLQSA RKDSRPADAA 60 LLEEQNSQGN NREASDPPLE TLRLLQLAVA EEEDDATSKL VIPRSTLPMP PSHESHGHGQ 120 DIQNLNPELQ VQGEAVVGGT TMLQQSLGQE MQGDCGASAM LHEQMYYIDH ELSIDDFLRD 180 DDYKINLPGS NPDGHNNLQG IDQLEHQQFN LPLDLPPPNS YVDANNSAQN TGDVFFHTSD 240 LLTTVCPSPS QYLGPKCALW DCGRLVRGSE ECQDYCNPYH AGLALNDDGL LGTRPVMRPR 300 GIDLKDGPLF AALCAKIQGK NVGIPVCEGA ATSKSPWNAP ELFDISLLGG ESLREWLFFD 360 TPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMKDFGGLKR SYYMDPQPAS DYEWHLFEYE 420 INDSDAIALY RLELKFSDAK RSAKSKLAST SSLNEIQQQM VRLSADSPVE NKRAARGRPK 480 SNQKDSNANT YPASLAYQAV SPNTPNPVSA SSAYQAVSPN TPNQVSASNA YQALSLNTPN 540 QVNAPNAYQA VSQVDKMTFL NENAVYGPHL PYGYSTERSD FYWNPSDET*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MAGDPSSGGG GHGSAPGKGS RSSSRHRQFR DRAKTRVDDL QEMFSGLQSA RKDSRPADAA  60
LLEEQNSQGN NREASDPPLE TLRLLQLAVA EEEDDATSKL VIPRSTLPMP PSHESHGHGQ  120
DIQNLNPELQ VQGEAVVGGT TMLQQSLGQE MQGDCGASAM LHEQMYYIDH ELSIDDFLRD  180
DDYKINLPGS NPDGHNNLQG IDQLEHQQFN LPLDLPPPNS YVDANNSAQN TGDVFFHTSD  240
LLTTVCPSPS QYLGPKCALW DCGRLVRGSE ECQDYCNPYH AGLALNDDGL LGTRPVMRPR  300
GIDLKDGPLF AALCAKIQGK NVGIPVCEGA ATSKSPWNAP ELFDISLLGG ESLREWLFFD  360
TPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMKDFGGLKR SYYMDPQPAS DYEWHLFEYE  420
INDSDAIALY RLELKFSDAK RSAKSKLAST SSLNEIQQQM VRLSADSPVE NKRAARGRPK  480
SNQKDSNANT YPASLAYQAV SPNTPNPVSA SSAYQAVSPN TPNQVSASNA YQALSLNTPN  540
QVNAPNAYQA VSQVDKMTFL NENAVYGPHL PYGYSTERSD FYWNPSDET*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001953G0120

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069076	0.0	AK069076.1 Oryza sativa Japonica Group cDNA clone:J023004H20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640409.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-131	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	Q75IJ9	0.0	Q75IJ9_ORYSJ; Uncharacterized protein
STRING	OS05T0515700-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-120	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]