PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001953G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 271aa    MW: 29154.5 Da    PI: 4.3892
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001953G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.2e-2874132259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp ++ +tY+ +H+h+
  PH01001953G0270  74 ADSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSHLDPAALLVTYSYDHDHP 132
                      69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.77968134IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-2971134IPR003657WRKY domain
SuperFamilySSF1182901.57E-2472134IPR003657WRKY domain
SMARTSM007741.4E-3373133IPR003657WRKY domain
PfamPF031062.4E-2475132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSTADGYCSG DSPLPEEQQP DLDSPAESPG GYQQKRGPPA PAPPGAKRSR GTVQKRVVSV  60
PIEGGGGAEG PPPADSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSHLDPAA  120
LLVTYSYDHD HPCPQPKNQA LADDKPPSPP PVEADELAGP EAPEHKFIES EITVDTPETP  180
AREACGGEER FEWFDDQMSL ESMALYAPAF EALDVALPLP LLLPLPLPEE WDRELQGEDA  240
LFAGLGELPE CAFVFGRRRD LGLAPPATCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-1855134679Disease resistance protein RRS1
5w3x_D6e-1855134679Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001953G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0966700.0FP096670.1 Phyllostachys edulis cDNA clone: bphylf031o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.14e-75probable WRKY transcription factor 65
TrEMBLA0A3L6SS551e-77A0A3L6SS55_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb03138.1.p2e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-42WRKY DNA-binding protein 65