PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001956G0200

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 886aa MW: 98456.7 Da PI: 4.9512

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001956G0200	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5e-07	738	780	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++ + +l++++ +q+G++ ++ I + ++ +t+ q++ ++ PH01001956G0200 738 RAKWSKSDTDLFYQGLRQFGSD-FAMIQQLFP-DKTRDQVRQKFK 780 569*****************.*****.*******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-9	729	785	IPR009057	Homeodomain-like
Pfam	PF15963	4.2E-25	731	811	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.1E-4	736	784	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.035	736	787	IPR017884	SANT domain
SMART	SM00717	3.8E-8	737	785	IPR001005	SANT/Myb domain
CDD	cd00167	8.81E-6	740	781	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MIDDEADFGN IIDAPAEVQT AAKFRPKARV KPRKPSVPSR SVVPNPTVET TDEKVGALSQ 60 ADVSQELTIN QETTSLMCLA SKTVGDGTAF RGILDTPSED GLTVSLGPVS NPDVTLDSST 120 GGVTAVDRVS QNEGHNDDLP EVATHQENLV VSDTQASSTS SSGKTIDDLA DFGGLFDTQV 180 EEERVAKFQP KIHVKPSKAA SKSHKTNQKA RASTVDVVLQ NKEDGDNQTG CNDEQLQDPR 240 YQESVQTSEF QASLGTDNST IDNLANLKSI LEEPVQEETA PKFRPKLGPK PGRASSRVVG 300 TNDKVAVAAP EVGFYDVDVV SRDTEDDRHG EGHNDDLCQK PTDQEAITVP DTWPPQDVDA 360 TVDLDSHDEL INPHPDGTQS IFGEPSALTS FPGTCLLIRS KHISVTAEAT VKFQPNVGRK 420 KRKGKSVSFV LPDASEGVGS TDTNSEMSNF SHDCNGIVTD ENLNNSPQQT AETHCITEEQ 480 YSNDREYTDR QSNHHEGEPS DHAVEQQPKL DVGESGLSMK LRSRKKLQKV GIPEHTADVN 540 FDEDYVEPSA AERDNDSGDE YTAGGKQKVR RKSREKGRIS REPSRGSKHT SKDSPIEESQ 600 QQKLQKNKSK VSSQGRKRPL KDTSTEKPER KLTHRIRQKR MKEVKTLLET PDHEIDRMKL 660 SVAHLRLLQE AKERIKGKEI PSGPSSSNQS SFQLGDTDHF DFFGDKELEN YDNDRTENHV 720 LDNTTKLNYH SYMNKQSRAK WSKSDTDLFY QGLRQFGSDF AMIQQLFPDK TRDQVRQKFK 780 TEEKKNPMLV HDAIIHRSRD NLYFRKVIKQ LNIEDVQPEI NSTHKQQGAS NEGDLGNENA 840 LDDFINKEEE NGSNWSDGTH RSEVKEGEHV SANADDDLDD VFDWY*

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MIDDEADFGN IIDAPAEVQT AAKFRPKARV KPRKPSVPSR SVVPNPTVET TDEKVGALSQ  60
ADVSQELTIN QETTSLMCLA SKTVGDGTAF RGILDTPSED GLTVSLGPVS NPDVTLDSST  120
GGVTAVDRVS QNEGHNDDLP EVATHQENLV VSDTQASSTS SSGKTIDDLA DFGGLFDTQV  180
EEERVAKFQP KIHVKPSKAA SKSHKTNQKA RASTVDVVLQ NKEDGDNQTG CNDEQLQDPR  240
YQESVQTSEF QASLGTDNST IDNLANLKSI LEEPVQEETA PKFRPKLGPK PGRASSRVVG  300
TNDKVAVAAP EVGFYDVDVV SRDTEDDRHG EGHNDDLCQK PTDQEAITVP DTWPPQDVDA  360
TVDLDSHDEL INPHPDGTQS IFGEPSALTS FPGTCLLIRS KHISVTAEAT VKFQPNVGRK  420
KRKGKSVSFV LPDASEGVGS TDTNSEMSNF SHDCNGIVTD ENLNNSPQQT AETHCITEEQ  480
YSNDREYTDR QSNHHEGEPS DHAVEQQPKL DVGESGLSMK LRSRKKLQKV GIPEHTADVN  540
FDEDYVEPSA AERDNDSGDE YTAGGKQKVR RKSREKGRIS REPSRGSKHT SKDSPIEESQ  600
QQKLQKNKSK VSSQGRKRPL KDTSTEKPER KLTHRIRQKR MKEVKTLLET PDHEIDRMKL  660
SVAHLRLLQE AKERIKGKEI PSGPSSSNQS SFQLGDTDHF DFFGDKELEN YDNDRTENHV  720
LDNTTKLNYH SYMNKQSRAK WSKSDTDLFY QGLRQFGSDF AMIQQLFPDK TRDQVRQKFK  780
TEEKKNPMLV HDAIIHRSRD NLYFRKVIKQ LNIEDVQPEI NSTHKQQGAS NEGDLGNENA  840
LDDFINKEEE NGSNWSDGTH RSEVKEGEHV SANADDDLDD VFDWY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001956G0200

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633004.1	0.0	uncharacterized protein LOC9267825
TrEMBL	B8AN66	0.0	B8AN66_ORYSI; Uncharacterized protein
STRING	ORUFI03G42160.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2595	29	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-36	MYB_related family protein