PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001978G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 387aa    MW: 41870.8 Da    PI: 5.1046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001978G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31188244259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg+e+prsYY+Ct+++C v+k+ve+sa d+++++i+Y+g+H he
  PH01001978G0130 188 DDGYNWRKYGQKAVKGAEYPRSYYKCTHRNCLVRKNVEHSA-DGRIIQIIYRGQHSHE 244
                      8****************************************.***************8 PP
2WRKY36.69.2e-12356377122
                      ---SS-EEEEEEE--TT-SS-E CS
             WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                      ldDgy+WrKYGqK vkg+++pr
  PH01001978G0130 356 LDDGYRWRKYGQKAVKGNPHPR 377
                      59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-28180246IPR003657WRKY domain
SuperFamilySSF1182901.06E-24185246IPR003657WRKY domain
SMARTSM007749.7E-34187245IPR003657WRKY domain
PfamPF031065.9E-24188243IPR003657WRKY domain
PROSITE profilePS5081124.134188246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-12343378IPR003657WRKY domain
SuperFamilySSF1182901.1E-9349378IPR003657WRKY domain
PROSITE profilePS5081115.526351386IPR003657WRKY domain
SMARTSM007743.5E-4356386IPR003657WRKY domain
PfamPF031066.7E-8357378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAAWQRPGGG LWTPPPCPTL NVCPLPALES LLAGSLFPEE PSPAAAVPSF FGGSLAQIPS  60
PPPPPVPLSA TALLGYPQVS KLVLAVALVF YFFGNLDNFE MFHEQDLAQL TAQVAHSKDS  120
ILIQADNSSS FSLATSALTS QHVSSSVIAA SMQEMPTLPS HADNINIEST GVLQGLQSSS  180
VTVDRPADDG YNWRKYGQKA VKGAEYPRSY YKCTHRNCLV RKNVEHSADG RIIQIIYRGQ  240
HSHERPSKKR FRDCGGLPNE LDDFNDNEDA STRSQSGFLD CYGKPITPNG TMAGCLMSRR  300
EEGDEQLSGS CDSQEEGDDE VQIDDGAAGD ANANERNAPA PGQKIIVSTT SEVDLLDDGY  360
RWRKYGQKAV KGNPHPRLLV KHFILE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-171882471878Probable WRKY transcription factor 4
2lex_A6e-171882471878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001978G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562765.11e-141probable WRKY transcription factor 3 isoform X1
TrEMBLA0A446M2T71e-140A0A446M2T7_TRITD; Uncharacterized protein
TrEMBLI1GSR71e-139I1GSR7_BRADI; Uncharacterized protein
STRINGBRADI1G22680.11e-140(Brachypodium distachyon)
STRINGTraes_2BS_380EC4D1E.11e-140(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-51WRKY DNA-binding protein 3