PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001983G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 282aa    MW: 28930.5 Da    PI: 8.3971
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001983G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-383390360
           zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      ++++cprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+
  PH01001983G0170 33 PEEVRCPRCDSANTKFCYYNNYNLSQPRHFCKTCRRYWTKGGLLRNVPVGGGCRKPKR 90
                     57899**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-262590IPR003851Zinc finger, Dof-type
PfamPF027011.7E-323590IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9753690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQEFMPIPGL ARRLFGGAVD PPDLRRSGVP LPPEEVRCPR CDSANTKFCY YNNYNLSQPR  60
HFCKTCRRYW TKGGLLRNVP VGGGCRKPKR PAAAAAAAAD VDKSVGVHRN AKNRRSGCTG  120
GSSGSPTASA ASASNTVGAA AAAHSSGGST TSTGVGPSAF PTDALPLPAP APAPMFADQA  180
APFASLFAPP PPLPAFSFLA QPKAEEDVAP AHTLTEQPSS ASSTADHMAQ FSVRSGGAAM  240
ASATAWPPAA VDAAGIFDLA GDSSLYCNLA SWTDPDGTIY LP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001983G0170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946320.0FP094632.1 Phyllostachys edulis cDNA clone: bphylf047i12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159027.11e-118dof zinc finger protein DOF5.4-like
TrEMBLA0A3B6TPD31e-117A0A3B6TPD3_WHEAT; Uncharacterized protein
TrEMBLA0A453RC511e-117A0A453RC51_AEGTS; Uncharacterized protein
STRINGMLOC_64612.11e-110(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-32TARGET OF MONOPTEROS 6