PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001986G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 316aa    MW: 34581.3 Da    PI: 4.5569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001986G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11148190754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PH01001986G0360 148 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 190
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.50E-5134195No hitNo description
PROSITE profilePS5088815.269141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16145211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16148209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9148190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.69E-4243271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MELEEQAFLE ELFSLRRDAW ECNAMGDFFS PACAAMDCFQ ERHQSTVSVL PTFTAAYEQP  60
AAPGFDCLSE VYGNAAFGPN AGAGDYGSEM GFLDVIEPKV PLVDGGLGVC KVEPGLVEGG  120
GGFNAGAVPP APASKKKRVE GMPSKNLMAE RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL  180
GDTIDYMKEL LERISQLQEE IDEQHQEQET PGVLSVFREL NPNEMLARNT PKFDVERKDG  240
GDTRVEIYCA AKPGLLLSTV STLDTLGLDI QQCVVSCFND FGMHASCSEM QRERISADVI  300
KQELFKNAGY GGGCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135155KKRVEGMPSKNLMAERRRRKR
2149156ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001986G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998890.0FP099889.1 Phyllostachys edulis cDNA clone: bphyst008e05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693904.11e-168PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL13e-70BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0E0E6I51e-169A0A0E0E6I5_9ORYZ; Uncharacterized protein
STRINGOGLUM06G29220.11e-165(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-56beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]