PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001999G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 390aa    MW: 41435.6 Da    PI: 6.4257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001999G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09148195455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++sLq
  PH01001999G0060 148 SHSLAERVRREKISERMKLLQDIVPGC----NKVTGKAVMLDEIINYVQSLQ 195
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.27E-11142199No hitNo description
SuperFamilySSF474595.89E-17142212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-17144211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-11150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAHDGFLGSF HGLAWPFTHD AVTAPLDALQ LQEVVMGGGG AGWEHEASAR ALDSALSSLV  60
SSPSSLAAAA TGGSHEAMLM EELASRLGGV CGGLGVPSPP SSRYASCYST PTPTKEAGNG  120
NGKRKEAAAE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDI VPGCNKVTGK  180
AVMLDEIINY VQSLQRQVEF LSMKLATVNP RLDFDVDNFT PKDANQPRAP APSSLPLLPP  240
AYSLEGSSSE FCYASSQGAA MQSAVTNAKG FEMPPSFVNH GIPGSSIDGF QSANSQWTPL  300
LQDKEQKEGK QQRGSPSWPP EKELLGCKLG GAVRPTPWPP WPMPILWSWV GPTLPSVGTG  360
PDRGVGSLGD AAALEEGANS RWYKELKEH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001999G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703449.13e-88transcription factor bHLH62
STRINGPavir.Ha00788.1.p4e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-52bHLH family protein