PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002025G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 160aa    MW: 17394.1 Da    PI: 11.8785
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002025G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.72.8e-333489458
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                      +Y+eClkNhAaslGghavDGCgEfmps+ +  +++++lkCaACgCHRnFHRr ++
  PH01002025G0150 34 SMYRECLKNHAASLGGHAVDGCGEFMPSPAAYpADPTSLKCAACGCHRNFHRRLTD 89
                     68**************************99999********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-283587IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.123687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-213684IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-303686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEAMDVKYKP AMFPNGAVKK VKPAAVAPAV VGESMYRECL KNHAASLGGH AVDGCGEFMP  60
SPAAYPADPT SLKCAACGCH RNFHRRLTDG SRRRLPRRRC QRRPCRRACS MASRTAGRRR  120
RRTGSRGSTA TSLTPTRTAR STTTRVFSSK KLTPRKDAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RRRRRT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002025G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145929.26e-46uncharacterized protein LOC100279452
SwissprotQ6ER215e-41ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLB6TFI11e-44B6TFI1_MAIZE; ZF-HD homeobox protein
TrEMBLB7ZY682e-44B7ZY68_MAIZE; Uncharacterized protein
TrEMBLK0DG721e-44K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment)
STRINGGRMZM2G161315_P012e-45(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-25zinc finger homeodomain 1