PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002035G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 489aa    MW: 51193 Da    PI: 4.8689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002035G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31234292259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  PH01002035G0390 234 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 292
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-31228294IPR003657WRKY domain
PROSITE profilePS5081133.109228294IPR003657WRKY domain
SuperFamilySSF1182903.27E-26231294IPR003657WRKY domain
SMARTSM007741.4E-37233293IPR003657WRKY domain
PfamPF031061.1E-25235292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MCDYFLQRME GDQAGDLTDI IRAGGAMPVG AADLPSTATE WQLPAEPILF PPPQSSSDGA  60
GPIGDAFGDP FSGLPDPFNS DYPSSSGGSA DFFDAVPDAM DVGMVKVGFV YVAVGGGGGG  120
GGEGGGGGTV DTGGVLDIRK PILSRGVQMP GVSPLSPRAI WPYPVMGGDT VSLGVPMAGQ  180
AVGPGAFDAV AGLQMSSPST GGIKRRKNQA RKVVCIPAPA AATGGRTSGE VVPSDLWAWR  240
KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ VERSRTDPNM LVITYTSEHN HPWPTQRNAL  300
AGSTRSHHAK NSSNNSAAAA SKNNSSHNQQ RPTIKAEPND QTAAAATATT TATTSMATTA  360
TASTSNTLPM AVKEEALVGL EMEKDVNDTS VTVDYHSDLM QQMFNQSYRP MIPEAGHQDD  420
FFADLAELES DPVSLIFSKE YMESRPGGEP DKEKALTKDL DPFMLDWAPT TAAISTAAGS  480
SFEQGQRGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25207295280Disease resistance protein RRS1
5w3x_D5e-25207295280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002035G0390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984900.0FP098490.1 Phyllostachys edulis cDNA clone: bphyem208o24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179949.10.0probable WRKY transcription factor 35
TrEMBLA0A3B6QJN70.0A0A3B6QJN7_WHEAT; Uncharacterized protein
TrEMBLA0A453PBR20.0A0A453PBR2_AEGTS; Uncharacterized protein
TrEMBLN1R4280.0N1R428_AEGTA; Putative WRKY transcription factor 35
STRINGEMT182620.0(Aegilops tauschii)
STRINGTraes_6DL_D4F2CDDDC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-67WRKY DNA-binding protein 35