PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002036G0230

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C3H

Protein Properties

Length: 590aa MW: 64817 Da PI: 4.8749

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002036G0230	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	52	82	1	27
--S---SGGGGTS....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG....tCkyGdrCkFaHgp 27 +kt+lC++f+r G C++Gd+C++aH++ PH01002036G0230 52 WKTSLCSYFRRRGagadGCSHGDSCRYAHSE 82 8****************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.6E-13	48	88	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.03E-7	48	87	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	51	82	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.911	51	83	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-7	52	82	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.40.50.150	2.8E-31	256	292	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	9.07E-12	256	292	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	9.07E-12	453	589	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	2.8E-31	456	529	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	2.8E-31	564	589	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MEEDKAQPPP PPSSELAGEK RKREDSPEAV TGDAAGLSSS AGEEAAGKHP MWKTSLCSYF 60 RRRGAGADGC SHGDSCRYAH SEEELRPRPD GTWDPTSDSA KKLRKVAAEA EEAEEEAVTV 120 DERCLDKCLV GLPRGWAADR LKTFLQEQAS IAYFWEGVTA VEEPVDCPNV SGISCKYAMM 180 FQDFLQSSSL PVWNRIDNSG FWRQFTVREG RSPAQAVVAQ DAGTQISEVM LIVQVCSTGV 240 DEVLMKDEFD KLSLALVVGI EMNESAVSDA QRNALINGVK NCRFVCGKAE DVMGSLLIEY 300 LGSPQQDIAV SKSNSEVSAT GKSEDIVDST QNNGENMDSS TQKNDDGESP QLTDIPVDCP 360 SCASDEIKGK FNTEKRRCDE IKGKSDDRFS KELVGGHDEY SETVGKNFCE EASLINEESI 420 DKKAADCLEN SKTCQDCSSI SNNDVLAAAA CQFKNIVAIV DPPLIKKQLT VWRTARHARI 480 VLPFLTMMCL QLLHVIKALR THPRIRRLVY ISCNPDSLVA NAIELCTPTS EKQEKNKGNR 540 GWRTMSSAGL ARQRTKSMPN SEPFVPKRAM AVDLFPHTSH CEMVMLFER*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MEEDKAQPPP PPSSELAGEK RKREDSPEAV TGDAAGLSSS AGEEAAGKHP MWKTSLCSYF  60
RRRGAGADGC SHGDSCRYAH SEEELRPRPD GTWDPTSDSA KKLRKVAAEA EEAEEEAVTV  120
DERCLDKCLV GLPRGWAADR LKTFLQEQAS IAYFWEGVTA VEEPVDCPNV SGISCKYAMM  180
FQDFLQSSSL PVWNRIDNSG FWRQFTVREG RSPAQAVVAQ DAGTQISEVM LIVQVCSTGV  240
DEVLMKDEFD KLSLALVVGI EMNESAVSDA QRNALINGVK NCRFVCGKAE DVMGSLLIEY  300
LGSPQQDIAV SKSNSEVSAT GKSEDIVDST QNNGENMDSS TQKNDDGESP QLTDIPVDCP  360
SCASDEIKGK FNTEKRRCDE IKGKSDDRFS KELVGGHDEY SETVGKNFCE EASLINEESI  420
DKKAADCLEN SKTCQDCSSI SNNDVLAAAA CQFKNIVAIV DPPLIKKQLT VWRTARHARI  480
VLPFLTMMCL QLLHVIKALR THPRIRRLVY ISCNPDSLVA NAIELCTPTS EKQEKNKGNR  540
GWRTMSSAGL ARQRTKSMPN SEPFVPKRAM AVDLFPHTSH CEMVMLFER*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002036G0230

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120156	1e-117	AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880667.1	1e-144	zinc finger CCCH domain-containing protein 24 isoform X2
Swissprot	Q8L7S3	4e-38	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A3B6D886	1e-169	A0A3B6D886_WHEAT; Uncharacterized protein
STRING	LPERR04G00120.1	1e-152	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8493	31	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	3e-40	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]