PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002064G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 875aa    MW: 97810.2 Da    PI: 8.8587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002064G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-111912691297
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      k+  l +p + a + +    ++  + l+d++g+s +++l  +  +g+  +  GW +Fv+++ +k gDf++F++ g s+f   v+vf
  PH01002064G0190 191 KEF-LLIPPTIAPKLEDW--TNHLVYLKDSEGKSSKIRL--SVVDGSLAFHHGWGGFVSDHSIKWGDFLLFEYAGISTF--SVRVF 269
                      443.78888888777644..4558***************..9999999*************************988888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.926179272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-16181274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17181274IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-4182272IPR003340B3 DNA binding domain
PfamPF023627.4E-9190268IPR003340B3 DNA binding domain
CDDcd100172.16E-9212269No hitNo description
SMARTSM010190.0087762858IPR003340B3 DNA binding domain
PfamPF023621.3E-7776855IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348776858IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-10777857IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-10787842IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-10788856No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MWNVDNKVTI RKLSTPSCEK EKKKEMLSSL NDEKNMRSGD RCKNKRSNTP LSLNKNEIKK  60
NENKKRTALI TCPVKKKKMR PSDSMEMKMH NCDSKDKKKR NTPSVLPKEN KIQTLSNNKK  120
ENKRKESLTP FKKEKKMRVD DNDKKVGSDD KGKGNKMQGD NTKEKKAQSG GREKKRKAPL  180
AFFKFICNNF KEFLLIPPTI APKLEDWTNH LVYLKDSEGK SSKIRLSVVD GSLAFHHGWG  240
GFVSDHSIKW GDFLLFEYAG ISTFSVRVFG MDCCERLHFD VERQGRNNQK ESHTLLDDLV  300
SSQRGRNSED IDDRHYVSGE YPRSKEPKAT VGSYSMNNGK IASCNLVAES MNAASETHRM  360
TANKKEDPSR VVSGVERGPS AAVYNEEGNL ATGECKTQSI SPMCSKEKTR RSEIILTTDA  420
APLTQENNDT VKLTLFSVAS ETHHVTVNTK EDPQGVAGGS WCGPSVTLDN KEGNLAIGEC  480
KTKSISPMCS QEKTRRSEII LITDAAPLTQ ENDDTVKLTT FSHHKENRSM MRESEPEVAT  540
PTKCTEIHDS DEDLRRKERN TVQLECTTVV DKCPNNCKNT VQLECTTVVD KCPNNCKMNT  600
TGNVCRKYGA PGGSRCLEKW KKGIVSGRAA LDGTGLIRPE KPQKTDEKLV GSCGAMGPNP  660
VEHRLWSDST DSCVQPMPDR ISKSGHSRAE FDHSVNGKGA TVQLLTKRKQ LELVGSIAEA  720
LELDDFSLPK INFEFCIPST TQTWLVELTT CEQWMAVIES IVCAPGSVRL VGSDELPKSL  780
SNAVRQKGRQ NRDVIMLKDP MKRLWPVFYH ENPVFVGFTS GWKPFVAANN LQIGDRCELL  840
KKLDEEEAVY HVQITKNEAS AGCTIFCKTS MVPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16377KKRTALITCPVKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002064G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624189.10.0B3 domain-containing protein Os02g0598200
RefseqXP_015624190.10.0B3 domain-containing protein Os02g0598200
SwissprotQ6K5K20.0Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLA0A0E0K1Z40.0A0A0E0K1Z4_ORYPU; Uncharacterized protein
STRINGOPUNC02G20840.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]