PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002069G0200

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 254aa MW: 28305.5 Da PI: 8.3485

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002069G0200	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.1	1.3e-30	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++l+h+kSHLQ+YR+ PH01002069G0200 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSLSHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-29	14	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.162	14	74	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.9E-24	18	71	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.42E-16	18	72	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MRGFERRGVR LYNRSDVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGVKGVSLS 60 HIKSHLQMYR SSSSNNSNHP ASLQNLMTTT ASNINKRVFM NREDHCVYAT SQDGNTAASD 120 RNAYTMLRCS HSSPYHQLPS TEEVIRSWEQ SRGRLPWKSN LLTTEKATRP SHTTNKKPRK 180 QTDCDLTLSI GMWEEASSDA DGSSTISEEL AAPSRDEGFG SPAAGDHHAA TVKKESNLPA 240 LNLDLTISSS WLT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-16	19	72	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-16	19	72	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002069G0200

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966301.1	1e-120	uncharacterized protein LOC101769616
TrEMBL	A0A0E0LEI8	1e-123	A0A0E0LEI8_ORYPU; Uncharacterized protein
STRING	OPUNC06G22010.1	1e-124	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-25	G2-like family protein