PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002076G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 426aa    MW: 45671.8 Da    PI: 8.462
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002076G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05397419223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  PH01002076G0110 397 VCPKCSKGFRDPVLLVEHVERdH 419
                      7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.71E-5633No hitNo description
Gene3DG3DSA:4.10.1110.102.2E-10227289IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-9229283No hitNo description
PfamPF014288.6E-8237276IPR000058Zinc finger, AN1-type
SMARTSM003552.3359382IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280361382IPR007087Zinc finger, C2H2
SMARTSM003559.3396419IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280398419IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGTPEFPDLG RHCSVGDCNQ IDFLPFSCNR CDHTSESSLV SSSLSREQGL ERGRERERGK  60
ASAGDGFKSR PRGDSGGDVE PSRKTLDSAV AEGTGLAPMQ PKWSSQEDGG EGISSGSSQP  120
LPSSPIPAEP AATAAIPPQG AAAMTSSSPC RGSPSPSSPR AFPTSASTLV FCLQHRSYTS  180
HKCPNANQKD ATVLICPLCA KGVRLNPNED PNITWESHVN TDCDPSNYQK VTKKKKCPVA  240
GCRETLTFSN TIRCKDCSKE HCLKHRFGPD HKCPGPRKLE STFPFANMLR RSQKVETRSN  300
SSNNSSSRWR SSLLNAASNF RSSAEAGMQK LSTATSQAFQ KAKDGISPNS SSNSSDLVEQ  360
CVHCPARFST VGALIEHAEK FHQNNSQSSR TGVTIDVCPK CSKGFRDPVL LVEHVERDHG  420
GTSRA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002076G0110
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0991940.0FP099194.1 Phyllostachys edulis cDNA clone: bphyem101c06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106258.21e-150AN1-type zinc finger protein 2B
RefseqXP_002460884.11e-150zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-144SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6QU761e-150A0A3L6QU76_PANMI; AN1-type zinc finger protein 2B
STRINGPavir.J03938.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.12e-91C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]