PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002097G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 183aa    MW: 20496.9 Da    PI: 10.7017
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002097G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.71.5e-1350105255
              AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV++++++gr++A+++d ++ ng ++k+ + g +g +e Aa+a++ a++k++g
  PH01002097G0110  50 AYRGVTRHRWTGRFEAHLWDKNTrNGtQSKKGRQGAYGDEEAAARAYDLAALKYWG 105
                      69******************77768898888888********************98 PP
2AP2301.3e-09148182138
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgt 38 
                      s+y+GV +++++g+W+A+I   +       k+ +lg+++ 
  PH01002097G0110 148 SKYRGVARHHRNGKWEARIGRmF-----GdKYLYLGTYDK 182
                      89****************99988.....56********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1549115IPR016177DNA-binding domain
SMARTSM003802.8E-2050119IPR001471AP2/ERF domain
PfamPF008479.1E-1050105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1250114IPR001471AP2/ERF domain
PROSITE profilePS5103219.00650113IPR001471AP2/ERF domain
PRINTSPR003673.4E-65162IPR001471AP2/ERF domain
PRINTSPR003673.4E-695115IPR001471AP2/ERF domain
PfamPF008472.5E-5148181IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-6148181IPR016177DNA-binding domain
PROSITE profilePS5103210.428149182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-4149181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAKPREKGAG AGNSASNAAE ADAAAAAARL KPKRTRKSVP RECPSQRSSA YRGVTRHRWT  60
GRFEAHLWDK NTRNGTQSKK GRQGAYGDEE AAARAYDLAA LKYWGRDTVL NFPLSTYDEE  120
LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHRNG KWEARIGRMF GDKYLYLGTY  180
DK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002097G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067691e-142AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588201e-142HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-93PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN44e-78AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLJ3MXL32e-92J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.14e-93(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.29e-77AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]