PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002101G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 219aa    MW: 23490 Da    PI: 8.1382
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002101G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA40.96.9e-13781013558
        CBFB_NFYA  35 rkpylheSRhkhAlrRpRgsgGrF 58 
                        pylheSRh hA++R+RgsgGrF
  PH01002101G0240  78 AVPYLHESRHLHAMKRARGSGGRF 101
                      579********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.1E-530104IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.9E-1178101IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.80580104IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEFEYNIKEI FCVVWNLCAG DSFGKTVDDP MRSTLTFNNK QSVFASQNID YGQPIACISY  60
PYNDSGSGGV WAAYGSSAVP YLHESRHLHA MKRARGSGGR FLNTKELQQQ QQSRTDSTEA  120
IADGTNSSGS THLRLGGGAA GDRTAAASKT MASQENSKRV AASAPAFTVT PMVHKDDTFF  180
QHHGHHLSFS GHFGQAGAQG GVVGAMHDGT QWRVPAMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002101G0240
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314352.18e-74nuclear transcription factor Y subunit A-5 isoform X4
TrEMBLQ6YZ668e-90Q6YZ66_ORYSJ; Uncharacterized protein OSJNBb0013K01.26
STRINGSb04g034760.13e-73(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-14nuclear factor Y, subunit A5