PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002122G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 168aa    MW: 19848.9 Da    PI: 10.6873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002122G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-16453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd +l  +v+q+G++ W+++a++m+  + R +k+c +rw +yl
  PH01002122G0230  4 RQRWRPEEDAILRSYVRQYGPREWNLVAQRMNvaLDRDAKSCLERWKNYL 53
                     89**********************************************97 PP
2Myb_DNA-binding24.56.2e-0870981747
                     HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +++G++ Wk+Ia++++ gRt+k +  +w  +
  PH01002122G0230 70 AKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 98
                     69****.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.341157IPR017930Myb domain
SMARTSM007171.4E-12355IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-20495IPR009057Homeodomain-like
CDDcd001671.62E-8653No hitNo description
Gene3DG3DSA:1.10.10.603.0E-21658IPR009057Homeodomain-like
PfamPF139213.3E-15767No hitNo description
SMARTSM007170.00658101IPR001005SANT/Myb domain
PROSITE profilePS5129412.69758103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-95997IPR009057Homeodomain-like
CDDcd001670.001466499No hitNo description
PfamPF002491.7E-56995IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKERQRWRPE EDAILRSYVR QYGPREWNLV AQRMNVALDR DAKSCLERWK NYLRPGIKKG  60
SLSEEEQRLA KHGNKWKKIA AEVPGRTAKR LGKWWEVFKE KQQRELRDSR RPPPEPSPDE  120
RGRYEWLLEN FAEKLVKERQ VAPLLMAAPM LPPWMSSTPL IVPSFVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-14795797MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-14795797C-Myb DNA-Binding Domain
1msf_C6e-14795797C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002122G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434561e-138AB443456.1 Triticum aestivum WRS2 mRNA for Myb transcription factor, complete cds.
GenBankJF9519021e-138JF951902.1 Triticum aestivum clone TaMYB18 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664658.12e-88PREDICTED: protein rough sheath 2 homolog
SwissprotQ9S7B26e-86RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A3B6KEE63e-85A0A3B6KEE6_WHEAT; Uncharacterized protein
TrEMBLA0A453JX538e-86A0A453JX53_AEGTS; Uncharacterized protein
STRINGOB12G23330.15e-85(Oryza brachyantha)
STRINGTraes_5BS_E635B0A281.22e-85(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.14e-63MYB family protein