PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002124G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 619aa    MW: 64813.1 Da    PI: 6.8078
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002124G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093233601954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  PH01002124G0100 323 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 360
                      554459******************************88 PP
2BELL116.61.2e-37185256172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+kk+kL+++l+eV++rY+qy++q+q+v+ssFeavag  sa+ Yt+lAl++iSr+FrcL+daia q+
  PH01002124G0100 185 ERQELQMKKSKLVNMLDEVEQRYRQYHHQMQAVASSFEAVAGARSARTYTALALRTISRQFRCLRDAIAAQV 256
                      79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-56106254IPR006563POX domain
PfamPF075261.2E-48112253IPR006563POX domain
PROSITE profilePS5007112.082301364IPR001356Homeobox domain
SMARTSM003899.7E-10304368IPR001356Homeobox domain
CDDcd000864.17E-13304365No hitNo description
SuperFamilySSF466894.11E-17305370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-29307370IPR009057Homeodomain-like
PfamPF059202.3E-18321360IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MAAYFTGGGS GTDVQTGTDG LQTLYLMNPN YVGYTDAAAA APNMMLLNSA VSSLGPASFG  60
HQPTPAAQHF VGIPLQPPPS GYNLWAPATT GGGAADMSPR QQVPGTSAEH AVMSSKYLKA  120
AQELLDEAVS VNKGVEEANA AVAIAKSAMA VKKKEDSEGG SGGGVEVEDG GGSKSGGAAE  180
MSTAERQELQ MKKSKLVNML DEVEQRYRQY HHQMQAVASS FEAVAGARSA RTYTALALRT  240
ISRQFRCLRD AIAAQVRSAS RTLGEDAEAA AGGRTVGSRL RFIDHQLRQQ RALQQLGMMQ  300
GGSWRPQRGL PERSVSVLRA WLFEHFLHPY PKDSDKIMLA KQTGLTRSQV SNWFINARVR  360
LWKPMVEEMY LEETKDKDAN AAAGAGDDNS GGGSKTSNNT DSTEPPKHVD NGMSSSAGAT  420
SKAARIAGIG SSKVDVHASL LEFAGDRQAQ ASFYGGDGGG GASFQHKLKK ARTVSDDPAA  480
FHVSDVATLQ AQAAAAARHD EAVSHRELLM KFMEAGGSGA TAGARGQLDD DDVGGYTLFT  540
PAPYGQFGSE QYAFAGNGGG VSLTLGLPHG AAAAEQTSSF LMSSSNTSDG VAAVTAGYDM  600
NMQSTKSFAA QLMRNFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-17310368563Homeobox protein Meis2
4xrm_B4e-17310368563Homeobox protein Meis2
5bng_A4e-17310368159Homeobox protein Meis2
5bng_B4e-17310368159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002124G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
TrEMBLA0A1E5WEK50.0A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRINGPavir.Ha01822.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.36e-88BEL1-like homeodomain 1