PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002131G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 251aa    MW: 27484.3 Da    PI: 10.6669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002131G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.42.4e-35181561128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknr.atksgyWk.atgkd 89 
                      lppGfrFhPtdeelvv+yL++k+ g +l++  vi+ev d+yk++Pwd+p    a+e e yfF+ r  + ++  g r +r +t+sg Wk a g+ 
  PH01002131G0260  18 LPPGFRFHPTDEELVVQYLRRKALGFPLPA-AVIPEVhDLYKLDPWDIP---GASEGEKYFFAVRPAAGTKrdGGRCRRaTTASGCWKpAGGRG 107
                      79****************************.8999999***********...3456799***9998876643388****7788*****556778 PP

              NAM  90 kevlsk...kgelvglkktLvfy....kgrapkge...ktdWvmheyrl 128
                      ++v+s+   +++lvg+k+++vf     kg+ap+++   +tdWvmheyr+
  PH01002131G0260 108 RPVVSSrcgGNHLVGVKRSMVFVlrgkKGKAPRASparQTDWVMHEYRV 156
                      9999989988899**********988866666544444*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-4415180IPR003441NAC domain
PROSITE profilePS5100544.83918180IPR003441NAC domain
PfamPF023657.7E-2219156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MERAPVLARQ GGLVLKQLPP GFRFHPTDEE LVVQYLRRKA LGFPLPAAVI PEVHDLYKLD  60
PWDIPGASEG EKYFFAVRPA AGTKRDGGRC RRATTASGCW KPAGGRGRPV VSSRCGGNHL  120
VGVKRSMVFV LRGKKGKAPR ASPARQTDWV MHEYRVTLPP HKNGCLAQAE EWVVCRIFQR  180
NRASRRPDHD ERRVPVGHAT AAHRTMMPPP SLSASSSSSC VTSSSDQEEV SSGHKHKQDA  240
GAAEAASQRE A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-351818617171NO APICAL MERISTEM PROTEIN
1ut4_B9e-351818617171NO APICAL MERISTEM PROTEIN
1ut7_A9e-351818617171NO APICAL MERISTEM PROTEIN
1ut7_B9e-351818617171NO APICAL MERISTEM PROTEIN
3swm_A9e-351818620174NAC domain-containing protein 19
3swm_B9e-351818620174NAC domain-containing protein 19
3swm_C9e-351818620174NAC domain-containing protein 19
3swm_D9e-351818620174NAC domain-containing protein 19
3swp_A9e-351818620174NAC domain-containing protein 19
3swp_B9e-351818620174NAC domain-containing protein 19
3swp_C9e-351818620174NAC domain-containing protein 19
3swp_D9e-351818620174NAC domain-containing protein 19
4dul_A9e-351818617171NAC domain-containing protein 19
4dul_B9e-351818617171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002131G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0964280.0FP096428.1 Phyllostachys edulis cDNA clone: bphyem102j18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151744.15e-90NAC domain-containing protein 83-like
TrEMBLA0A3B6RII05e-89A0A3B6RII0_WHEAT; Uncharacterized protein
TrEMBLA0A446XDS25e-89A0A446XDS2_TRITD; Uncharacterized protein
STRINGEMT329991e-86(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-46NAC domain containing protein 83