PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002136G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 468aa    MW: 53248.9 Da    PI: 9.0178
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002136G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.31.3e-1376128557
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      t+ ++ q++ Le+++ + +yp+ e++++ A+++gL  +qV++WF+ rR ke++
  PH01002136G0270  76 TKKSPLQIQMLERFYSEVQYPKPEDMADYATSVGLAYSQVRMWFKERRRKERR 128
                      566899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.28569129IPR001356Homeobox domain
SMARTSM003893.2E-1271133IPR001356Homeobox domain
SuperFamilySSF466892.65E-1272136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-1376137IPR009057Homeodomain-like
CDDcd000865.25E-576123No hitNo description
PfamPF000465.3E-1176128IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAPAQVRPSD PTLALEAWFL ALLLRPDWVN FGGNRVLVWA IGRVGLFCGV RSAWVTGEGL  60
CVMINGLEAK RENAGTKKSP LQIQMLERFY SEVQYPKPED MADYATSVGL AYSQVRMWFK  120
ERRRKERREM EAMETHMERQ LGAGSNGRRC SRSRSSSFSQ CPMYNTVGLQ PEDDSSVDRS  180
MSFIGEKHIL RSQVLFPKDY ILRKVFRKDG PPLGSEFDPL PQRAHCHPRV ADTTGYHSYQ  240
NKRVMKKRKI MESTTQRSTL PCEDSGPFQK HGIGKGLMTV WHAMYSCNGN IQTGPNFIYE  300
TGCLRSLRPF DDCDRLEDHD DGKLIQKQIM ARKKVDKRSR PPPNKRKAPC SRVTTPKEHP  360
PMECHLSVDE SESSELQTEQ PTLVDDEELE LSELQAGPNP LRCSAHLSSS GRYGCPLCKD  420
LLARFPPPSV KMKQPFSTRP WQSSPAMVKK LFQDSDLQSE TIYLYKY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121128RRRKERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002136G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646956.10.0homeobox-DDT domain protein RLT3 isoform X1
TrEMBLB8B8L70.0B8B8L7_ORYSI; Uncharacterized protein
STRINGOB07G27970.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.12e-43Homeodomain-like transcriptional regulator