PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002142G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YC
Protein Properties Length: 152aa    MW: 15671.7 Da    PI: 6.2773
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002142G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.43.2e-133611519100
            NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100
                       +lP+ r+kki+++d d+++++ ea  l++ a elf+  l+  +  h+  + rr+++ + + aa  ++  + dfl+d  p  e
  PH01002142G0040  36 PALPVGRVKKIIRVDRDIRKVTGEAALLIAAATELFLGSLA--AGAHTA-AARRAVRAAHVRAAArAHRPTADFLLDCLPAAE 115
                      589*********************************98876..556775.4678899999987761567799*****999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.56E-1231114IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.0E-143596IPR009072Histone-fold
PfamPF008083.1E-93896IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MATAAAAAAA PTDAMEQVGE EERAEEEAEP EASLEPALPV GRVKKIIRVD RDIRKVTGEA  60
ALLIAAATEL FLGSLAAGAH TAAARRAVRA AHVRAAARAH RPTADFLLDC LPAAEEAPRA  120
RSAAGSDGDG GEAKPLPRGT RRIDAFFNKV T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002142G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457226.13e-43nuclear transcription factor Y subunit C-2
TrEMBLA0A3B6EFW64e-45A0A3B6EFW6_WHEAT; Uncharacterized protein
TrEMBLA0A446N6Y24e-45A0A446N6Y2_TRITD; Uncharacterized protein
STRINGPavir.J40808.1.p2e-43(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628