PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002142G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 210aa    MW: 21513.2 Da    PI: 10.4215
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002142G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.22.4e-11183205123
                      ---SS-EEEEEEE--TT-SS-EE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                      ldDgy+WrKYGqK+vk++++pr 
  PH01002142G0270 183 LDDGYKWRKYGQKVVKNTQHPRC 205
                      59*******************83 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-13168205IPR003657WRKY domain
SuperFamilySSF1182902.62E-10175207IPR003657WRKY domain
PROSITE profilePS5081112.978178209IPR003657WRKY domain
SMARTSM007741.9E-4183209IPR003657WRKY domain
PfamPF031061.5E-7184205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MALGHGQACT ATNAGAMAAA SSSSAASTPT VTFSFQPSPP PPSALTHHGL LGYSHLVLDH  60
PTTTTSSSSH APSTILASTL HHLHAPPTIP HPPARSLPPH PWSCEEGDQD RQRGKGAVMS  120
TGVVGVNNAA AGGSGGGGLH GSAAAGLGIG AVRMKKAGGG GKARRKVREP RFCFKTMSDV  180
DVLDDGYKWR KYGQKVVKNT QHPRCTHTH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002142G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-65HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818604.16e-53probable WRKY transcription factor 13
TrEMBLA0A3L6SQQ71e-59A0A3L6SQQ7_PANMI; Putative WRKY transcription factor 12
STRINGPavir.Eb00332.1.p8e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-19WRKY DNA-binding protein 13