PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002143G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 1058aa    MW: 118284 Da    PI: 8.6116
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002143G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11635.4e-51481624117
             CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                      e  +rw +++ei+a+L+n+++ ++++++ ++p+sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+f r
  PH01002143G0030  48 EaASRWFRPNEIYAVLANHARLKVQAQPINKPSSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEERVHVYYARGEDDPNFFR 141
                      4489****************************************************************************************** PP

             CG-1  97 rcywlLeeelekivlvhylev 117
                      rcywlL++ele+ivlvhy+++
  PH01002143G0030 142 RCYWLLDKELERIVLVHYRQT 162
                      ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.64442168IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-6245163IPR005559CG-1 DNA-binding domain
PfamPF038596.2E-4449161IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.54E-10395483IPR014756Immunoglobulin E-set
CDDcd002042.60E-16554689No hitNo description
Gene3DG3DSA:1.25.40.201.8E-17579694IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.77E-17581695IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.555597701IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-7603693IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.434630662IPR002110Ankyrin repeat
SMARTSM002485.4E-6630659IPR002110Ankyrin repeat
SMARTSM00248280669698IPR002110Ankyrin repeat
PROSITE profilePS500966.797778807IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.51E-5781847IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.4796818IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529797824IPR000048IQ motif, EF-hand binding site
PfamPF006120.059799817IPR000048IQ motif, EF-hand binding site
SMARTSM000150.08819841IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633820844IPR000048IQ motif, EF-hand binding site
PfamPF006120.018822840IPR000048IQ motif, EF-hand binding site
SMARTSM000156.7900922IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.285902930IPR000048IQ motif, EF-hand binding site
PfamPF006120.17903922IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MASLGARRLA ASPSPGAAAP VRWPRLARRR TPARLSRADL NFEKLKAEAA SRWFRPNEIY  60
AVLANHARLK VQAQPINKPS SGTVVLYDRK VVRNFRKDGH NWKKKKDGKT VQEAHEKLKI  120
GNEERVHVYY ARGEDDPNFF RRCYWLLDKE LERIVLVHYR QTSEENATAP LNAETEVPEV  180
PTINMIQYAS PLTSPDSVSA HTELSCSTAA PEEINSHGGR AISSETDDHG SSLEEINSFW  240
ANLLESSMEN DTSVCGGSLA SSQQIKHDPR DSGNNILNTN TASNAIFVPP LNVTSEAYAT  300
NPGLNQVHAS YFGALKHQED QSQSHLTSDL DSQSEQFVSS LVQTPADGNI PNDVPARQNS  360
LGVWKYLDDD SPCLGDNLTS AIQSFHPVTN ERLFNITEIS PEWAYCSTGN TKVLVVGYFY  420
EQSKHLTESN MYGVFGEKCV AADIVQAGVY RFMAGPHTPG LVNFYLTLDG KTPISEVLSF  480
EYRTIPGSSL MSDLMPLEDE YKKSKLQMQM RLARLLFATN KKKVSPKLLA AGSKVSNLIS  540
ASPEKEWMDL WKTASNSEGM YVSVTEGLLE LVLRNRLQEW LLEKVAEGHK STGRDDLGQG  600
PIHLCSCLGY TWAIRLFGLS GFSLDFRDSS GWTALHWAAC HGRERMVAAL LSAGANPSLV  660
TDPTPESPGG CTAADLAARQ GYDGLAAYLA EKGLTAHFEA MSLFKDTEQS VARTRLTKLQ  720
SEKFENLSEQ ELCLKESLAA YRNAADAASN IQAALRERTL KLQTKAIQLA NPEMEASQIV  780
AAMKIQHAFR NYNRKKEMRA AARIQSHFRT WKIKRNFMNM RRQVIRIQAA YRGHQVRRQY  840
YKVIWSVGVV EKAILRWRKK RRGLRGIGTG MPVAMTVDAE PASTAEEDFF QASRQQAEDR  900
FNRSVVRVQA LFRSYRAQQD YRRMKTAHEE AKSDAARHRS IEPDAVSSPQ RCLGVASISI  960
IETGFNMRLH MRGQRLWEFL TGEFPCTPRP AEPVLPKDAS EDARTKVYES FMDAMETFQT  1020
QYATYKTWID GDARTSAILV TSMEVQFIRD VVGLASA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002143G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646432.10.0calmodulin-binding transcription activator CBT-like isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A0E0I0Z00.0A0A0E0I0Z0_ORYNI; Uncharacterized protein
STRINGOS07T0490200-010.0(Oryza sativa)
STRINGONIVA07G13300.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators