PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002146G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 398aa    MW: 43481 Da    PI: 6.3298
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002146G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.2e-081760339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     +r C+ + + +++++Ce ++ +lC+ C  + H+        H+v
  PH01002146G0170 17 ARACDGCMRRRARWHCEADDAFLCQACDASVHSAnplarrhHRV 60
                     578*****************************668888886655 PP
2CCT66.85.8e-23315358144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  PH01002146G0170 315 REARLSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 358
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-81562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1531562IPR000315B-box-type zinc finger
PfamPF006433.1E-61759IPR000315B-box-type zinc finger
CDDcd000212.16E-111862No hitNo description
PROSITE profilePS5101715.983315357IPR010402CCT domain
PfamPF062038.3E-18315357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTDAGAATGA ALGARTARAC DGCMRRRARW HCEADDAFLC QACDASVHSA NPLARRHHRV  60
RLPSASTSPA SSPPRSADPD APAWLHGLKR RPRTPRSKPG GGKHEASTAA SAVPDLEADE  120
SGVVGDNDVE DDDEYLLYRV PVFDPMLAEL YNPVPDEGEP LEQKPACLAS LAEPSPEFAS  180
GSAEADGLSG FDVPDMELAS FAADMESLLM GVDDGFDDLG FLDEEKPQVN LELDMDFDTM  240
AAPLPELVDS KKKRPEMILK LDYEGVISSW ARDGSSPWFH GERPHLDHGE SWPEFPAGSR  300
GVLGAAVTAV TSGEREARLS RYREKRRTRL FAKKIRYEVR KLNAEKRPRM KGRFVKRTAL  360
PPLPLSRPPP PPPRALPHHA QVPMVLAPHV AHGRFRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793LKRRPRT
2325341RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002146G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797667.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3Q8BCB90.0A0A3Q8BCB9_BAMOL; COLJ
STRINGSi035937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-60B-box type zinc finger protein with CCT domain