PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002164G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 247aa    MW: 27543.6 Da    PI: 5.2909
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002164G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.38.4e-121585571
              NAM  5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatg 71
                     f  hP+++el++ +L+++v + + ++ e+++++d+y ++P dL +      ++++ek wyfF+  + k  + 
  PH01002164G0250 15 FAAHPSEQELITSFLRPRVVSGDRSC-EFVHDADVYAADPADLTRaytpaLASNGEKAWYFFTAVRAKGGRH 85
                     5569*****************99999.89**************84466654555889******988876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.6311170IPR003441NAC domain
PfamPF023652.8E-513107IPR003441NAC domain
SuperFamilySSF1019412.09E-2114126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVASRRSEAS RRPDFAAHPS EQELITSFLR PRVVSGDRSC EFVHDADVYA ADPADLTRAY  60
TPALASNGEK AWYFFTAVRA KGGRHRQSFS FVTKEDGRLV RSGWLMVELG LDDGQEELAL  120
CKVYLSPRAN KQGSGRKRKA ADASAGPVRQ RRRRARPSPT EAAESDSGSE ADDPVEEDEP  180
ALGGPEEHAE KDPMADEAED EDEWSFSWWL RNKSRLMAEL GIDEADFKHI RVVISFVMKR  240
VVRTSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136153KRKAADASAGPVRQRRRR
2148155RQRRRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002164G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193093.14e-62NAC domain-containing protein 92-like
TrEMBLA0A077RSX25e-61A0A077RSX2_WHEAT; Uncharacterized protein
TrEMBLA0A446PUM35e-61A0A446PUM3_TRITD; Uncharacterized protein
STRINGSb03g031000.13e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-11NAC domain containing protein 47