PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002169G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 338aa    MW: 35915.6 Da    PI: 8.6912
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002169G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.4e-07111131425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      ++C+ff++ G C+yG++C+F H
  PH01002169G0300 111 RPCKFFLA-GDCSYGEKCRFPH 131
                      79******.***********66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8262854IPR000571Zinc finger, CCCH-type
SMARTSM003560.572953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6108132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4111131IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5111131IPR000571Zinc finger, CCCH-type
SMARTSM003203.2138178IPR001680WD40 repeat
SuperFamilySSF509781.16E-17138310IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.0E-16140305IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203207244IPR001680WD40 repeat
PROSITE profilePS5029411.866214297IPR017986WD40-repeat-containing domain
SMARTSM003200.21251288IPR001680WD40 repeat
PfamPF004000.1256287IPR001680WD40 repeat
PROSITE profilePS500829.239258297IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDVETDGRFG NKRVHNRMGP APGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPDATSK  60
RPNHSAGSGG HVWRNPNSGG GGGRGGGGGL NKWGRGPGGA DGGARHKAPD RPCKFFLAGD  120
CSYGEKCRFP HTYCMSDSIT LLTPLQGHEK VVTGIVLPTG SDKLYSGSKD GTCAGVINMG  180
REIGCMISEG PWLFVGIPDA VKVWNVQTQA EMNLTGPTGQ VYALAVANEL LFAATQDGRI  240
LAWRFSAATN CFEPAASLVG HQLAVVSLVV GAMRLYSGSM DKTIRVWAAT ESGSLEVTYT  300
HKEEHPFWLT SNSSYLGVFY GFRGLGLTQV NGWHVLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002169G0300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647681.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-175C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D9YWE60.0A0A0D9YWE6_9ORYZ; Uncharacterized protein
STRINGOGLUM02G28370.20.0(Oryza glumipatula)
STRINGOBART02G27780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.13e-99zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]