PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002178G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 119aa    MW: 13585.6 Da    PI: 11.3764
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002178G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.94.4e-083377650
                     HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                     + +r++ NR +A+  R+RK+  ++ L   v+ L  eN++L+  l+
  PH01002178G0270 33 KRKRRMENRRSAKIARLRKRRHLDDLISQVDLLAMENQRLITVLN 77
                     5689999*********************************96655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-42992IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.5193372IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-83382No hitNo description
Gene3DG3DSA:1.20.5.1707.3E-633107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MGLPFGTSSS SSHGTQSAGS EGDMELQARM DLKRKRRMEN RRSAKIARLR KRRHLDDLIS  60
QVDLLAMENQ RLITVLNITA QSNAAGEAQN SVLRTQMMEL ENRLRALHDF LLHEFKPVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13452KRRMENRRSAKIARLRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002178G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933190.0FP093319.1 Phyllostachys edulis cDNA clone: bphylf037b05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822603.11e-40bZIP transcription factor 44-like isoform X1
TrEMBLA0A2S3I2092e-39A0A2S3I209_9POAL; Uncharacterized protein
STRINGORUFI08G13590.11e-39(Oryza rufipogon)
STRINGORGLA08G0106400.11e-39(Oryza glaberrima)
STRINGOBART08G12060.11e-39(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.16e-18G-box binding factor 6