PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002180G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 293aa    MW: 31708.7 Da    PI: 8.7674
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002180G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.35.4e-13159184227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  PH01002180G0090 159 DQPECQFYMKTGDCKFGAVCKFHHPK 184
                      689*********************96 PP
2zf-CCCH40.25.7e-13204230127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  PH01002180G0090 204 PGEPLCTFYSRYGICKFGPNCKFDHPM 230
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.315123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511157185IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5157184IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9159184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4163184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197203231IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7203230IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10205230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6206231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4208228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MCLLLKNRAV QFGSTCKFHH PQPSNAMVAV RGSVYSPGPS ATSPGQHTYP GAVTNWPLSR  60
SASFIASPRW PGHSSYAQVI VPPGLVQVPG WNPYAAQLGS SSSDDQQRTS GAAQYYTGSR  120
QSETPGMGDQ GMFSSYQAGS VPVGLYAVQR ENIFPERPDQ PECQFYMKTG DCKFGAVCKF  180
HHPKERIIPT PNCALTPLGL PLRPGEPLCT FYSRYGICKF GPNCKFDHPM GTVMYGLATS  240
PTGEVPTARR MLAPVPAHSE VSPDNGSGRS RRIIHSDSQQ IPSGERSTER EAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002180G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951930.0FP095193.1 Phyllostachys edulis cDNA clone: bphylf048f08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662931.10.0PREDICTED: zinc finger CCCH domain-containing protein 63
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9XRZ10.0A0A0D9XRZ1_9ORYZ; Uncharacterized protein
STRINGOB11G20340.10.0(Oryza brachyantha)
STRINGLPERR11G10480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-65zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]