PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002187G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 195aa    MW: 20243.9 Da    PI: 9.0469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002187G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC+ CgksF +   L  H  +H
  PH01002187G0020 23 FKCSVCGKSFGSYQALGGHKTSH 45
                     89********9999888887776 PP
2zf-C2H213.20.0002793115123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k F++   L  H r+H
  PH01002187G0020  93 HKCSICHKEFPTGQALGGHKRKH 115
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.7E-42346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.3212350IPR007087Zinc finger, C2H2
SMARTSM003550.0112345IPR015880Zinc finger, C2H2-like
PfamPF139129.1E-132346IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-92345No hitNo description
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-988115No hitNo description
PfamPF139128.6E-1392117IPR007087Zinc finger, C2H2
SMARTSM003550.03893115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.16293115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MLARGGHHRV QAPPPPPAQA AEFKCSVCGK SFGSYQALGG HKTSHRVKQP APATAPLVAP  60
TPVAAFLPPA ADDREPAMSS TTASSDGATN RVHKCSICHK EFPTGQALGG HKRKHYDGGV  120
GGAASSTELL AAAAAAESEV GSSGNGNSAA RAFDLNLPAV PEFVWRPCAK GKKMWEDEEE  180
VQSPLAFKKP RLLTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002187G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939070.0FP093907.1 Phyllostachys edulis cDNA clone: bphylf045a24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.11e-91zinc finger protein 1
SwissprotQ424305e-94ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0D7921e-105A0A0E0D792_9ORYZ; Uncharacterized protein
STRINGOMERI03G31660.11e-106(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-25zinc-finger protein 2