PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002188G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 191aa    MW: 20393.2 Da    PI: 8.7283
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002188G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.65.2e-44261251100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cv+apyfp  +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+l
  PH01002188G0200  26 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEMPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQL 119
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      al+++e
  PH01002188G0200 120 ALAQAE 125
                      **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.47325126IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-4326123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MRDVVAADGR ASRQGQGGVG GGASVPCAAC KLLRRRCAAG CVFAPYFPPG EPHKFANVHK  60
VFGASNVSKL LQEMPVQHRG DAVSSLVYEA NARVRDPIYG CVGAISSLQQ QVEALQAQLA  120
LAQAEMVRLK MSNAYITHRL KARGSSSTGS PSSMSSPKTA EPEAHYKPTP ELDMVVDQPN  180
MIEDSQFWSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-51221287113LOB family transfactor Ramosa2.1
5ly0_B6e-51221287113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002188G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629600.15e-83LOB domain-containing protein 4
SwissprotQ8LBW37e-58LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A3L6TSK82e-89A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRINGPavir.Ia01095.1.p6e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-36LOB domain-containing protein 4
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]