PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002226G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 514aa    MW: 54229 Da    PI: 8.3977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002226G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.5e-0679101123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++Cgk F r  nL+ H r H
  PH01002226G0310  79 YVCEICGKGFQREQNLQLHRRGH 101
                      9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-878101No hitNo description
SMARTSM003550.001379101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92679101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-679101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM0035535121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-8151176No hitNo description
SMARTSM00355150156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MMFKDLAEIQ QQQQQLAAAA AAADKNMSNL TSASGDQASV SSHPLPPPPK KKRSLPGNPD  60
PDAEVIALSP RTLMATNRYV CEICGKGFQR EQNLQLHRRG HNLPWKLKQR NPKEVVRKKV  120
YVCPEPGCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCDK CSKRYAVHSD WKAHSKVCGT  180
REYRCDCGTL FSRQVYHLFF FFVLVVFVFF SMPCMSMISG CVDVCMAFCD ALAEESARAV  240
TAAAAVAGQH PGLLFSQGGG GGGSGNAGLQ LPSVLDPSQS LGGHALIQEL CLKREQQQQQ  300
FAPSWLTAQQ QQQVELAGAG STAMFGSARL ELDHEFIGSS TPESSAQLAG LSFGSFSSSA  360
TPAAAHMSAT ALLQKAAQMG ATLSRPSSQG QMASTHSTSA TANVTTTNAA AAAAATSNVT  420
STALGAGYGL AFEASHFGAD ERARTTDRDA GGGGGNAVVA GGGNDGLTRD FLGLRAFSHS  480
DILSMAGFDP CMSTSASSAA YEQGHQSSKP WHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-22152238364Zinc finger protein JACKDAW
5b3h_F5e-22152238364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105118KLKQRNPKEVVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002226G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643871.10.0PREDICTED: protein indeterminate-domain 11-like
TrEMBLA0A3L6R1260.0A0A3L6R126_PANMI; Uncharacterized protein
STRINGORGLA01G0057600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-91indeterminate(ID)-domain 7