PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002311G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 260aa    MW: 29917 Da    PI: 10.2675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002311G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.4e-16132222197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +t+s+v+   +l lp +f ++h  +k ++ t+tl de   +++  +    ++++  l++GW++F+ +++L +gD +vF+l++r++f+ ++
  PH01002311G0210 132 FVKPMTQSHVTGGFWLGLPTQFSRKHL-PK-RDETITLVDEVDDEFDTFY--LAHKRG--LSAGWRGFAIDHKLVDGDCLVFQLIKRTKFKVRF 219
                      89************************5.33.5669***********9999..666666..9*************************9*998888 PP

                      EEE CS
               B3  95 kvf 97 
                      ++f
  PH01002311G0210 220 QAF 222
                      766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-23126218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-19126218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-24130219No hitNo description
PROSITE profilePS5086310.461132223IPR003340B3 DNA binding domain
SMARTSM010193.3E-15132225IPR003340B3 DNA binding domain
PfamPF023621.6E-14132222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAEAISYEEQ RRRQVEENKR KLDELRLHHL SAAVREAAAK PSPTKSLKRK ALVLRRDAGE  60
DAPLRRSGRL ASLPEQPKYR DDSWGFEKKI RRTYSTRRDL SDRVYATDEE RGYAITMAEE  120
LEDKLGSDHP IFVKPMTQSH VTGGFWLGLP TQFSRKHLPK RDETITLVDE VDDEFDTFYL  180
AHKRGLSAGW RGFAIDHKLV DGDCLVFQLI KRTKFKVRFQ AFLHLAQGFH RNIVRNPAFI  240
FPQNSSSIHA FQVGPVKNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002311G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743466e-47AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227844.11e-125B3 domain-containing protein Os06g0194400
RefseqXP_010227845.11e-125B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-120Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLI1GZP01e-123I1GZP0_BRADI; Uncharacterized protein
STRINGBRADI1G45517.11e-124(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-58B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]