PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002320G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 231aa    MW: 25827.8 Da    PI: 5.7783
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002320G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601071.5e-3319117199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aC aCk++rr+C +dC+la+yfp+++p+ f+n+h+lFG+sn+l++l+++ +++ +dam+++++eA+a+   P +G+v++i +l +ql+q +a+l
  PH01002320G0310  19 ACVACKYQRRRCRADCPLARYFPHDRPRLFRNAHRLFGVSNILQTLDRVGPDRSNDAMRAIAFEADAWDMYPAHGCVAIIAALLHQLRQDEAQL 112
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      ++l++
  PH01002320G0310 113 HQLNA 117
                      99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.33618119IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3219116IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MPARQQQGVG GGGSSGTPAC VACKYQRRRC RADCPLARYF PHDRPRLFRN AHRLFGVSNI  60
LQTLDRVGPD RSNDAMRAIA FEADAWDMYP AHGCVAIIAA LLHQLRQDEA QLHQLNARLD  120
AYRGGGIIAE ATPSSSSMIA LPLMENNSNI MYQPRLYNNN DDIDASLLWT MQRQYDNNVV  180
VHMADGIPQQ QGHQHFLLDT STGGQHEYDD ISPFLENIDN EEEMPFESSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-21151378131LOB family transfactor Ramosa2.1
5ly0_B8e-21151378131LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002320G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-47HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191288.13e-55LOB domain-containing protein 4-like, partial
TrEMBLA0A2S3HLA11e-42A0A2S3HLA1_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-31LOB domain-containing protein 27