PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002335G0340

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 157aa MW: 17035.4 Da PI: 8.9992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002335G0340	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0017	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H PH01002335G0340 45 FVCKTCSRAFTSFQALGGHRTSH 67 89**********99998888777 PP
2	zf-C2H2	14.2	0.00013	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg F L H+r+H PH01002335G0340 95 YECHICGLGFEMGQALGGHMRRH 117 99********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.04E-5	41	71	No hit	No description
SMART	SM00355	0.61	45	67	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	6.4E-10	45	69	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	45	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.36E-6	93	120	No hit	No description
PROSITE profile	PS50157	10.492	95	122	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	95	117	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.1E-10	95	120	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MKHLREEEVS LALALSLSTY SAESGPAAKK AKRRPVVATS GEGEFVCKTC SRAFTSFQAL 60 GGHRTSHLRG RHGLELGVGA KAMRQHKVAK ARQQYECHIC GLGFEMGQAL GGHMRRHREE 120 MNGADAADEW VWRSVALPEE VAGHAAAERV LLELFA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002335G0340

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100175	1e-129	FP100175.1 Phyllostachys edulis cDNA clone: bphyem123g23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795976.1	4e-62	zinc finger protein ZAT5-like
TrEMBL	A0A3L6S7X8	4e-66	A0A3L6S7X8_PANMI; Zinc finger protein ZAT12-like
STRING	Pavir.J00894.1.p	1e-65	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1305	30	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46070.1	1e-20	C2H2 family protein