PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002356G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 89aa    MW: 9854.84 Da    PI: 9.5073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002356G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-111764347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +W+t E +l+ +a + +G g   +W++++r mg  +t+ +++ ++ ++
  PH01002356G0230 17 AWSTKENKLFEEALAYYGEGtpdRWHKVSRAMGGSKTADEVRRHYETL 64
                     7********************************99**********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2821065IPR017877Myb-like domain
SMARTSM007172.3E-81467IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-131673IPR009057Homeodomain-like
CDDcd001672.20E-61765No hitNo description
PfamPF002497.9E-91764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-51766IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSGSRSSSR NANAASAWST KENKLFEEAL AYYGEGTPDR WHKVSRAMGG SKTADEVRRH  60
YETLVDDVKL IESGRLPFPK YNTQGAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2418851177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002356G0230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935931e-147FP093593.1 Phyllostachys edulis cDNA clone: bphylf056b16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.11e-46protein RADIALIS-like 3
SwissprotQ6NNN01e-25RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1E5VS269e-46A0A1E5VS26_9POAL; Uncharacterized protein
STRINGOB01G34720.15e-46(Oryza brachyantha)
STRINGSb03g030330.14e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-23RAD-like 6