PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002378G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 301aa    MW: 31982.4 Da    PI: 6.3413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002378G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY759.1e-24104165159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg +WrKYGqKe+++s++p++Y+rCt++   +C ++++v+r++e+p+++ +tY g H+++
  PH01002378G0050 104 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqQCAAQRQVQRCDENPDTFRVTYIGVHTCR 165
                      58***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-2591167IPR003657WRKY domain
SuperFamilySSF1182904.71E-2499167IPR003657WRKY domain
PROSITE profilePS5081120.07199167IPR003657WRKY domain
SMARTSM007742.0E-33104166IPR003657WRKY domain
PfamPF031061.1E-21105165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSMAAPYVQV MEDLLKGQEF ATQLQGLLRD SPKAGLLTDQ ILHTFSRAIC AAKTVTAAGE  60
GSEVQSEVTC GRKRKGAAGG GHPRGASRRR TQQSSGVTTT MKNLDDGQAW RKYGQKEIQN  120
SKHPKAYFRC THKYDQQCAA QRQVQRCDEN PDTFRVTYIG VHTCRDPAAV APPVIHQTSG  180
ADGLHAGSRL ISFEPNACAT AGMPATTTST TTTANTNQTE KVAALGLGLQ SLKHEGGDQE  240
EVLSSLTPGS SAVPGSAAAT AGGPDQGDVT STLHSYGDGL DMGEFFDDYT FGLDDIFDLD  300
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-3798165269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002378G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0978320.0FP097832.1 Phyllostachys edulis cDNA clone: bphyem119e03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962450.11e-107probable WRKY transcription factor 70
TrEMBLA0A0A9VCV71e-115A0A0A9VCV7_ARUDO; Uncharacterized protein
STRINGPavir.Ca02012.1.p1e-107(Panicum virgatum)
STRINGSi022702m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-19WRKY DNA-binding protein 70