PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002384G0100

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 250aa MW: 25770.4 Da PI: 10.2565

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002384G0100	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.4	2.1e-35	67	121	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ + PH01002384G0100 67 EQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSARKRPR 121 68*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.512	67	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-31	67	119	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-22	68	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MPGQVMEARL HQQLPPMPVA LTPPNWNHEA TTTAMAAATA AADVSCLQQV VPGNASANAV 60 AATGGREQCP RCASHDTKFC YYNNYNTSQP RHFCRACRRY WTLGGSLRNV PIGGSARKRP 120 RMAPPVVRRP PVHFGAPPPM PPPPSQQGLL GSLFALGAAS LLEGRVGFDL GLGLPGPGQV 180 GHAGAGEVGL HGLGLRGGSA GTSASLLWPT GLLENDSVDT WKVPVAAAGA ILAGVLRRGG 240 GSTGGRPASW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002384G0100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100017	0.0	FP100017.1 Phyllostachys edulis cDNA clone: bphylf059n05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153027.1	7e-83	dof zinc finger protein DOF3.1-like
Refseq	XP_020171952.1	7e-83	dof zinc finger protein DOF3.1-like
TrEMBL	A5HWF6	4e-82	A5HWF6_HORVV; Dof zinc finger protein 7
STRING	Traes_4DS_4CF7C00FE.1	3e-82	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-24	DOF zinc finger protein 1