PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002393G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 288aa    MW: 31011.7 Da    PI: 11.5701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002393G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-165099255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  PH01002393G0230 50 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 99
                     69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-3049108IPR001471AP2/ERF domain
PROSITE profilePS5103222.58950107IPR001471AP2/ERF domain
PfamPF008473.5E-105099IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2150109IPR016177DNA-binding domain
SMARTSM003801.4E-3550113IPR001471AP2/ERF domain
PRINTSPR003678.3E-125162IPR001471AP2/ERF domain
CDDcd000181.83E-2253108No hitNo description
PRINTSPR003678.3E-1289109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQGEYRSSSE ESAAAAVAPL AAAAVAAKEE QVTVAVAAAP LPQQQQPRRQ YRGVRMRKWG  60
KWVAEIREPH KRTRIWLGSY ATPVAAARAY DTAVFYLRGR SARLNFPDEI SALTLSSEGG  120
GGEPREPDGA ALSAARRPVR RVDPEEGHRG RFTRRRAPDR HDGRARAPPR AAEASATPQP  180
PPPLAAAAAR RRAPPAAATP AAAAAADGVE RPGQEPGSKP GAESGGLRCR VKQETHRRKL  240
HSATRTYSLQ RAAYDQHNYR IHPPTYSAAA TAAAASVRWR DFSIRFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1449112468ATERF1
3gcc_A8e-1449112468ATERF1
5wx9_A1e-13501111476Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002393G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.13e-30DREB and EAR motif protein 3