PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002396G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 311aa    MW: 34149.5 Da    PI: 5.669
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002396G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.3e-26117178159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDgy+WrKYGqKe+  +++prsY+rC ++    Cp++++v+rs+ dp+++eitY g+H+++
  PH01002396G0160 117 MDDGYSWRKYGQKEIFAAKYPRSYFRCKHKyeqLCPATRQVQRSEADPSMFEITYIGDHTCT 178
                      59***************************98878**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25114179IPR003657WRKY domain
SuperFamilySSF1182901.96E-23116179IPR003657WRKY domain
SMARTSM007747.9E-37117179IPR003657WRKY domain
PROSITE profilePS5081120.449117175IPR003657WRKY domain
PfamPF031063.9E-25118177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGSNNRTRQD QDDDASSDRP EARLLVESLM EAQRSANELK ACLQLEKSSS SSSSMDPLAL  60
VEGISESLSR VIMLLLQSQS TGRRSPLMVS PARRGSGGYK RRTQASQGCR KELRSSMDDG  120
YSWRKYGQKE IFAAKYPRSY FRCKHKYEQL CPATRQVQRS EADPSMFEIT YIGDHTCTQN  180
RQAVTDNGVI KREDVLSPST EFESGRDHRA PADHESTHGD DGAPVHLDGS FSYATASDRQ  240
AMALELGGHA YGDDVTFDGR RYSNTYYTAA AGGGFDDELA AAASSLGGFT STSTSAMIWE  300
LIPSNNTWID *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-24116177768OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002396G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-32WRKY DNA-binding protein 70