PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002417G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 596aa    MW: 67134.5 Da    PI: 6.0545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002417G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.73.7e-1302265942373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cAea+s++ + + ++l++     +s +g+p+qRl ay++e+L ar  +s++++y++l+++e +   s+e l+++k++++++P++kf++
  PH01002417G0180 226 KQLLTKCAEALSEDRTDEFRKLVQDACGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRSLNCREPE---SKELLSYMKILYNICPYFKFGY 316
                      689*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aI ea+++e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+++ ee+++p+ef++l   + +
  PH01002417G0180 317 MAANGAIAEALKSEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaHGEGLEIVGKMLKSMSEEFNIPLEFTPL-PVNAT 409
                      *******************************************************99999***************************6.77899 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+lpr+s+e
  PH01002417G0180 410 EVTKEMLEVRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFVETMDYYSAMFESIDANLPRDSKE 503
                      999******************************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ee++++++lgWk+r+L+s+SaW
  PH01002417G0180 504 RISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLEEKDDAMLLGWKKRKLISASAW 594
                      *************************************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.69199576IPR005202Transcription factor GRAS
PfamPF035141.3E-127226594IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDVLKGGVSY VILSRYLFAK PPLLGWIFWL FKYRLAGANV VYEIPTENNL ANSPWPASPL  60
KFEFSNSPYT PLSSQLECDN LSALSNTPDN QSSTETISAQ PISPLEADSS YRQAGILLRE  120
NIQVGPDPLY ATSRHNMQHA LREIETVLMA PDTDDATTST KHEFEETKPT QLMMQRSRTW  180
SHESRQLSPG VVRQQFATGG YPTASYEFRP EKRQRELRED PQFIVKQLLT KCAEALSEDR  240
TDEFRKLVQD ACGVVSINGE PIQRLGAYLL EGLVARHGNS GTNIYRSLNC REPESKELLS  300
YMKILYNICP YFKFGYMAAN GAIAEALKSE DKIHIIDFQI AQGTQWITLI QALAARPGGP  360
PHVRITGIDD PVSEYAHGEG LEIVGKMLKS MSEEFNIPLE FTPLPVNATE VTKEMLEVRP  420
GEALAVNFTL QLHHTPDESV DVNNPRDGLL RMVKGLSPKV TTLVEQESHT NTTPFLMRFV  480
ETMDYYSAMF ESIDANLPRD SKERISVEQH CLAKDIVNII ACEGKDRVER HELLGKWKSR  540
LTMAGFKPYP LSSYVNSVIK KLLACYSDKY TLEEKDDAML LGWKKRKLIS ASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-712095943378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002417G0180
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657807.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0E0LLW10.0A0A0E0LLW1_ORYPU; Uncharacterized protein
STRINGOPUNC07G16570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-180GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]