PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002437G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 453aa    MW: 51343.3 Da    PI: 5.0085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002437G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.3e-34161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F +g++ ll+
  PH01002437G0340  16 FLIKTYEMVEDPATNHVVSWGPAGASFVVWNPPDFSRDLLPKYFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEDFVRGHTYLLK 100
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k 
  PH01002437G0340 101 NIYRRKP 107
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3810100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6112105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MESSHGGGGS SSPPPFLIKT YEMVEDPATN HVVSWGPAGA SFVVWNPPDF SRDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKID PERWEFANED FVRGHTYLLK NIYRRKPVHS HSFQNQINGP  120
LAESERRELE DEINRLKYEK SVLVADLHRQ TEQQCGISWQ MQSLEERLML MEQRQKNILA  180
SLCDILQRRG AVSSSLVETG HFSKKRRVPK IDFFVEEPAV EEQQVPYSRT MVTEIPSMFP  240
MHPVNAQPLD RMELALVSLE RFFQRANYAS SEDMHNGATA PSPALTLVEM QTAPMETSVN  300
LQPSASLHPS SPNAGHVRSS PELEESPSYV QSPILPLTEI HEDTHKTMTE VDMNSENSTT  360
DTSQDETTET RVCHEPAKVN DLFWERFLTE TPHSFYACGA GSERQDADGK RETAEAKDDA  420
RIGVAVDCNC LSHWDNVDQI IEQMGPLASA EKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-25610519129Heat shock factor protein 1
5d5v_B7e-25610519129Heat shock factor protein 1
5d5v_D7e-25610519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002437G0340
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0926550.0FP092655.1 Phyllostachys edulis cDNA clone: bphyem213b03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0heat stress transcription factor A-4d
SwissprotQ93VB50.0HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLK3Z6570.0K3Z657_SETIT; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-64heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]