PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002508G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 396aa    MW: 42318.2 Da    PI: 6.6465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002508G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.4e-09226274355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PH01002508G0050 226 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 274
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17221292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16226289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6226274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-11227278No hitNo description
SMARTSM003537.7E-10229279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGNPFSPGSW NPSAQNLGLG ETNANAMITG HPFPSLLGML SAGVSPFAAT SGFIDCGTGF  60
PCFNGSNLGA MINHPFPSTQ PLGNFQNGIE PSREIETTVG EGCKDASLTG DVQQGDAETS  120
HGVDASDMEL SKAECSGGAG QDERPSVSCA KKRKRSGQDG KVKHVEGSQQ LATAAAQQKN  180
DNDEKGEPKR PVMASGKSNG KQTKDNAGVL KEEYIHVRAR HGQATNSHSL AERVRREKIS  240
ERMKFLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPT LDFNMERILS  300
KDFFQSQDTT ASSAFGFSLD IGHLHLHPPK HSQAGLPSVV NPTDAFGRVI NAPVGTSSTF  360
KEPTHQMPNN FDGEFYNVIG MPFTPLNNQE SNGKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002508G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563957.10.0transcription factor bHLH49
TrEMBLI1GZ240.0I1GZ24_BRADI; Uncharacterized protein
STRINGBRADI1G43650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-72bHLH family protein