PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002513G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 235aa    MW: 25238.4 Da    PI: 6.257
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002513G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-11125169549
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L+ e +aL  ++
  PH01002513G0060 125 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRV 169
                      899*********************************999998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-13121185IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.611123179IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-12125179No hitNo description
Gene3DG3DSA:1.20.5.1704.6E-14125179No hitNo description
PfamPF001705.8E-10125175IPR004827Basic-leucine zipper domain
CDDcd147031.99E-22126176No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAQLPPRAPS AAAQDWSAAG EFLGFAAARR GAHRRSASDS AAFLEAVPMD DVIGGDEFDR  60
LDDEQLMSMF SDVEAPAVSD GGGERAGEAQ LLDMGEAEEG MVATSPAGPR AMAAPAAADG  120
VADPKRVKRI LANRQSAQRS RVRKLQYISE LERSVTTLQM EVSALSPRVA FLDHQRSLLT  180
VGNSHLKQRI AALAQDKIFK DAHQEALKKE IERLRQLYHH QQIKATGGAD IAAAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002513G0060
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By white light. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962470.0FP096247.1 Phyllostachys edulis cDNA clone: bphyst038a13, full insert sequence.
GenBankFP0974720.0FP097472.1 Phyllostachys edulis cDNA clone: bphylf047m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828193.11e-134basic leucine zipper 19-like
SwissprotQ6K3R91e-106BZP19_ORYSJ; Basic leucine zipper 19
TrEMBLA0A0A9FPX71e-145A0A0A9FPX7_ARUDO; Uncharacterized protein
STRINGPavir.Ab01112.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-54bZIP family protein