PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002537G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 605aa    MW: 64021.4 Da    PI: 7.5186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002537G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30250309159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+
  PH01002537G0070 250 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVAaGCPVRKQVQRCAEDMSILITTYEGTHNHP 309
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-32235309IPR003657WRKY domain
SuperFamilySSF1182903.4E-27243310IPR003657WRKY domain
PROSITE profilePS5081128.151245311IPR003657WRKY domain
SMARTSM007743.3E-37250310IPR003657WRKY domain
PfamPF031062.4E-27251309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MIKGEKQLGI HEERLKDKMK KDDLVSDGNF FKSLLNQSST QKEVKLLGEL VDACNSIWYQ  60
NQKVREDKLA STRAEMDEVR EENEKLKKML SRVVEDHRSL QMHFYDVLQQ GRAKKLADSP  120
TTLPTNIEEP EFVSLSLGTS TRRRDKEEKS TIGEGKENEF SFKIKEGGLS LGLSDCNSEK  180
VQPDVLTLSP EGSFDDTKDD AIETTEQWQP SKMLKNLSSG GAETEDGIAP QLHVKKTRVS  240
VRARCDAPTM NDGCQWRKYG QKTAKGNPCP RAYYRCTVAA GCPVRKQVQR CAEDMSILIT  300
TYEGTHNHPL SVSATAMAST TSAAASMLMS GSTSLDFPTT SSATAGLHGL NFSLPVAADA  360
SKLPGGRPFF LPTGAASITS TPSYPTVTLD LTSPTTSQAF SLSNRFSSNF IGSHSTRYPS  420
SSFTFSSSVP SNLPSATAWP AGAGYLSYGS SGAPYNGGKS SFEAALGSIN GRQGSAAALY  480
QVPQLQQKAS ASDGAASSVL TDTIAKAITT DPSFHKALAA AITSYVGTQG ASSAGGGEGS  540
LKSGEHLGLG PSSTACSLAL LARSSSTVAA QSSSGQMFLQ PSLGLPGSTS ASTSPVENRG  600
EHIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20237310173WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002537G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485556e-92AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964541.10.0probable WRKY transcription factor 72
TrEMBLA0A0E0L7R30.0A0A0E0L7R3_ORYPU; Uncharacterized protein
STRINGOPUNC06G02780.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-71WRKY DNA-binding protein 72