PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002558G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 245aa    MW: 25935 Da    PI: 7.6314
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002558G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.1e-2842100259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s  +C+++k ver+++dp++++ tY+g+H h+
  PH01002558G0060  42 ADVWAWRKYGQKPIKGSPYPRGYYRCSSDkECKARKMVERCRTDPHTFVLTYTGDHSHP 100
                      69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-2929102IPR003657WRKY domain
PROSITE profilePS5081130.50336102IPR003657WRKY domain
SuperFamilySSF1182907.98E-2540102IPR003657WRKY domain
SMARTSM007743.0E-3241101IPR003657WRKY domain
PfamPF031061.5E-2343100IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPHPTGQQAS GGGGPRSKKK TGGRKKQVKK VVRRVPADFV SADVWAWRKY GQKPIKGSPY  60
PRGYYRCSSD KECKARKMVE RCRTDPHTFV LTYTGDHSHP VPIHRNSLAG TTRHKQLSSP  120
EPAAVGAQQA TEAAAAAEPS PAPSTSAGQS PTTPLHSPSV EYGQEEEFDE AGSGLLWEDV  180
EMAGDEALLF LNPEEPAMYV GGDTKVDGGV GAAPIINIVE ETFVVTPWIT AAGDSIAAAL  240
GGRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-1827102479Disease resistance protein RRS1
5w3x_D6e-1827102479Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002558G0060
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161578.12e-67WRKY transcription factor 22-like
SwissprotO046092e-40WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A3B6TLL35e-66A0A3B6TLL3_WHEAT; Uncharacterized protein
TrEMBLA0A453S6Z55e-66A0A453S6Z5_AEGTS; Uncharacterized protein
TrEMBLA0A453S7E91e-67A0A453S7E9_AEGTS; Uncharacterized protein
STRINGSi017529m3e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-39WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]